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Swiss Proteomics Society 2008 Interactive Training Initiative  

Applied Proteomics – Tips & Tricks
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Merck SERONO

Sanofi Aventis

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AC immune

Om Pharma

HHC

Dompe

Debiopharm

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Vifor

Bioark

Abrema

Accoustic Implant

Voisin Consulting

Anecova

Novartis

Roche Diagnostics

Syngenta

Vaud

Geneve

Geneve finance

Waters

 

 

Program

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DECEMBER 3rd

13.00 - 14.30 Registration

14.30 - 15.15 Opening Plenary Session
Manuel Peitsch: Swiss Institute of Bioinformatics, chairman executive board

Integrating In Silico and Experimental Approaches to Study Biological Systems

15.15 - 18.00
Two Parallel Sessions (coffee break at 16.15)

Session 1: Bioinformatics for proteomics data

- Piercarlo Fantucci, University of Milano - Bicocca, IT

- Christophe Bruley, CEA, Grenoble, FR
Mass spectrometry user's requirements: from basic data management to advanced data analysis tools

- Pierre-Alain Binz, Swiss Institute of Bioinformatics and Geneva Bioinformatics (GeneBio) SA, Geneva, CH
The GeneBio-SIB collaborations: where Convergence and Divergence merge into successful bioinformatics

- David Fernandez, Noray Bioinformatics S.L., Colleretto Giacosa, IT
Bioinformatic tools for proteomics data integration and analysis for biomarkers identification

Session 2: Beyond discovery in proteomics

- Virginie Brun, IRTSV, CEA, Grenoble, FR
Quantitative proteomics: Applications to clinical biomarkers detection and food safety assessment

- Enrico Bucci, BioIndustry Park Canavese, Colleretto Giacosa, IT
An expanded proteomic approach to ALS biomarker identification ?

- Maria Gabriella Giuffrida, Institute of Sciences of Food Production - CNR, IT
Proteomics and new perspectives in food allergy

- Michael Affolter, Nestle Research Center, Lausanne, CH
Nutritional proteomics: Biomarkers for nutrition and health

DECEMBER 4th

08.00 - 09.00 Posters setup

09.00 - 12.30 Partnering event and SPS Training Initiative wrap-up session

12.30 - 14.30 Lunch break buffet style and Poster session

:: AFTERNOON :: 14.30 - 17.00
Two Parallel Sessions (coffee break at 15.30)

Session 3: Bioinformatics for genomics and transcriptomics data

- Ferdinando Di Cunto, University of Turin, IT
Predicting gene function through conserved coexpression analysis

- Enzo Medico, University of Torino Medical School, IT
Converting transcriptomics data into diagnostic tools for cancer molecular classification

- Yves Vandenbrouck, Laboratoire de Biologie, Informatique et Mathématiques, CEA-Grenoble, FR
Comparative transcriptomics approach for extracting transcriptional module: state-of-the-art and case study

- Jérôme Wojcik, Merck Serono Geneva Research Center, CH
Identification of disease-risk and drug-response biomarkers by whole genome association studies

Session 4 : Translational medicine with proteomics

- Natacha Turck, Biomedical Proteomics Research Group, University of Geneva, CH
Collaboration Biomérieux/BPRG: unraveling biomarkers in neurovascular disorders, the BPRG point of view

- Alberto Abate, bioMérieux, Lyon, FR
Collaboration Biomérieux/BPRG: unraveling biomarkers in neurovascular disorders, the Biomérieux point of view

- Jean-Jacques Diaz, University Claude Bernard, Lyon, FR
Proteomics : a bridge between viral infection and cancer

- Frédéric Eberle, Roche Diagnostics, FR
Genomic biomarkers: contribution of diagnostic tests to personalized medicine

17.00 - 17.45 Closing Plenary Session
Denis Hochstrasser, University Hospital of Geneva

Biomarkers in Medical Practice

17.45 - 18.00 Amos Bairoch, UniGe and SIB, Geneva, CH
CALIPHO: Computer Analysis and Laboratory Investigation of Proteins of Human Origin; a new project of the University of Geneva and the Swiss Institute of Bioinformatics

17.00 Poster Award Ceremony
Closing session